Thomas Werner1,2, Susan M. Dombrowski3,4, Carlos Zgheib5, Fouad A. Zouein5, Henry L. Keen6, Mazen Kurdi5,7, George W. Booz5
European Cytokine Network, Vol.24, No.2, pp. 75-90, 2013, DOI:10.1684/ecn.2013.0336
Abstract Microarrays do not yield direct evidence for functional connections between genes. However, transcription
factors (TFs) and their binding sites (TFBSs) in promoters are important for inducing and coordinating
changes in RNA levels, and thus represent the first layer of functional interaction. Similar to genes, TFs act only in
context, which is why a TF/TFBS-based promoter analysis of genes needs to be done in the form of gene(TF)-gene
networks, not individual TFs or TFBSs. In addition, integration of the literature and various databases (e.g. GO,
MeSH, etc) allows the adding of genes relevant for the functional… More >