Open Access
ARTICLE
Selection and validation of reference genes for quantitative real-time polymerase chain reaction analyses of Serratia ureilytica DW2
FENGLIN BAI1,2,#, BIANXIA BAI1,2,#, TINGTING JIN1,2, GUIPING ZHANG1,2, JIAHONG REN1,2,*
1 The Department of Life Sciences, Changzhi University, Changzhi, China
2 Ecological and Environmental Research Institute of Taihang Mountain, Changzhi, China
* Corresponding Author: Jiahong Ren, # These authors contributed equally to this work.
(This article belongs to this Special Issue: Advances in Plant Cell Biology Research)
BIOCELL 2023, 47(3), 647-656. https://doi.org/10.32604/biocell.2023.024758
Received 27 July 2022; Accepted 07 September 2022; Issue published 03 January 2023
Abstract
Background: Serratia ureilytica DW2 is a highly efficient phosphate-solubilizing bacteria isolated from
Codonopsis pilosula rhizosphere soil that can promote the growth of
C. pilosula; nonetheless, until now, no validated
reference genes from the genus
Serratia have been reported that can be used for the normalization of quantitative
real-time polymerase chain reaction (RT–qPCR) data.
Methods: To screen stable reference genes of
S. ureilytica
DW2, the expression of its eight candidate reference genes (
16S rRNA,
ftsZ,
ftsA,
mreB,
recA,
slyD,
thiC, and
zipA)
under different treatment conditions (pH, temperature, culture time, and salt content) was assayed by RT–qPCR. The
expression stability of these genes was analyzed using different algorithms (geNorm, NormFinder, and BestKeeper).
To verify the reliability of the data, the expression of the glucose dehydrogenase (
gdh) gene under different soluble
phosphate levels was quantified using the most stably expressed reference gene.
Results: The results showed that the
zipA and
16S rRNA genes were the most stable reference genes, and the least stable genes were
thiC and
recA. The
expression of
gdh was consistent with the phosphate solubilization ability on plates containing the National Botanical
Research Institute phosphate growth medium.
Conclusion: Therefore, this study provides a stable and reliable
reference gene of Serratia for the accurate quantification of functional gene expression in future studies.
Keywords
Cite This Article
BAI, F., BAI, B., JIN, T., ZHANG, G., REN, J. (2023). Selection and validation of reference genes for quantitative real-time polymerase chain reaction analyses of
Serratia ureilytica DW2.
BIOCELL, 47(3), 647–656.