Somchai Sriyab¹, Wannapong Triampo²

The International Conference on Computational & Experimental Engineering and Sciences, Vol.13, No.3, pp. 51-52, 2009, DOI:10.3970/icces.2009.013.051

Abstract Understanding of Bacteria cell division is essential for an understanding of microorganism as well as the origin of the life. Particularly, in cell division process of \emph {E. coli}, Min proteins (MinD and MinE) play crucial roles to regulate the dividing dynamics physically via their oscillatory dynamics from pole to pole. In this work, we have developed a numerical scheme based on the mesoscopic Lattice Boltzmann Method (LBM) to simulate the coarse-grained coupled reaction-diffusion equations model used to describe the MinD/MinE interaction in two dimensions. Biologically, we have focused on investigating how the protein copies affect the oscillation patterns as… More >

Waipot Ngamsaad, Wannapong Triampo¹

The International Conference on Computational & Experimental Engineering and Sciences, Vol.13, No.2, pp. 49-50, 2009, DOI:10.3970/icces.2009.013.049

Abstract The Min-proteins oscillation in \emph {E. coli} has an essential role in controlling the accuracy placement of cell-division septum at the middle cell zone of the bacteria. This biochemical process has been successfully described by a set of reaction-diffusion equation at the macroscopic level [1]. Recently, a mesoscopic modeling by the lattice Boltzmann method (LBM) has been proposed to simulate the Min-proteins oscillation [2]. However, as pointed out by Zhang et al., the standard boundary conditions are not accuracy for a class of dispersion transport modeled by LBM [3]. In this present work, we investigated the boundary effects in LBM… More >

R. Djebali¹, B. Pateyron², M. ElGanaoui³

CMC-Computers, Materials & Continua, Vol.25, No.2, pp. 159-176, 2011, DOI:10.3970/cmc.2011.025.159

Abstract Axisymetric lattice Boltzmann (LB) model is developed to investigate the interaction of momentum and heat between plasma hot gas and Alumina powders. The plasma flow is simulated using a double population lattice Boltzmann model and the plasma-particles interaction is modeled based on a Lagrangian approach for the motion and heat transfer equations. The present results show that the LB method is an efficient and powerful tool to comprehend and explain the very high complexity of the plasma jet physics as well as it preserves effectively the computational cost. The present results for the centerline temperature and velocity profiles agree well… More >

Matthew D. Lindemer¹, Suresh G. Advani^2,*, Ajay K. Prasad²

CMES-Computer Modeling in Engineering & Sciences, Vol.117, No.3, pp. 527-553, 2018, DOI:10.31614/cmes.2018.00481

Abstract The lattice Boltzmann method (LBM) is used to simulate the growth of a solid-deposit on the walls of a circular tube resulting from a gas-to-solid reaction and precipitation process. This process is of particular interest for the design of reactors for the production of hydrogen by the heterogeneous hydrolysis of steam with Zn vapor in the Zn/ZnO thermochemical cycle. The solid deposit of ZnO product on the tube wall evolves in time according to the temporally- and axially-varying convective-diffusive transport and reaction of Zn vapor with steam on the solid surface. The LBM is well-suited to solving problems with coupled… More >

Kazuhiko Suga^1,2, Takahiko Ito¹

CMES-Computer Modeling in Engineering & Sciences, Vol.75, No.2, pp. 141-172, 2011, DOI:10.3970/cmes.2011.075.141

Abstract The multiple-relaxation-time lattice Boltzmann method for micro-scale flows (MRT µ-flow LBM) is extensively evaluated in this study. Following the study of Chai, Shi, Guo and Lu (2010), the diffusive bounce-back wall boundary condition and the collision matrix are modeled. To determine the model parameters, the first-order, 1.5-order and second-order slip-flow models are discussed. Since the mean free path of gas molecules is considered to be influenced by the wall in micro flow systems, the effects of a correction function after Stops (1970) are also evaluated. As the increase of the Knudsen number (Kn), it is necessary to introduce the regularization… More >

J.H. Wu¹, L.Y. Zhu², J.T. Tang³

CMES-Computer Modeling in Engineering & Sciences, Vol.86, No.3, pp. 225-240, 2012, DOI:10.3970/cmes.2012.086.225

Abstract Magnetic induction hyperthermia is one of hopeful methods for tumor therapy. In this method, several ferromagnetic seeds are needed to be implanted into the tumor. The seeds would produce energy, and cause the nearby tumor to die. Temperature prediction is significant before treatment. In addition, in clinical treatment, the tumor temperature has to be monitored in realtime. However, using as few thermometers as possible is the basic principle. Fortunately, the numerical simulation can contribute to realtime measurement. The seed temperature is modeled based on the Haider's method, which is treated as the thermal boundary in numerical simulation. We employ the… More >

R. Djebali¹, M. El Ganaoui²

CMES-Computer Modeling in Engineering & Sciences, Vol.71, No.3, pp. 179-202, 2011, DOI:10.3970/cmes.2011.071.179

Abstract The Lattice Boltzmann method (LBM) became, today, a powerful tool for simulating fluid flows. Its improvements for different applications and configurations offers more flexibility and results in several schemes such as in presence of external/internal forcing term. However, we look for the suitable model that gives correct informations, matches the hydrodynamic equations and preserves some features like coding easily, preserving computational cost, stability and accuracy. In the present work, high order incompressible models and equilibrium distribution functions for the advection-diffusion equations are analyzed. Boundary conditions, acceleration, stability and preconditioning with initial fields are underlined which permit to rigorously selecting two… More >

Kazuhiko Suga^1,2, Takahiko Ito¹

CMES-Computer Modeling in Engineering & Sciences, Vol.63, No.3, pp. 223-242, 2010, DOI:10.3970/cmes.2010.063.223

Abstract Flow passages in micro/nano-electro-mechanical systems (MEMS/ -NEMS) usually have complicated geometries. The present study thus discusses on the latest lattice Boltzmann methods (LBMs) for micro/nano fluidics to evaluate their applicability to micro/nano-flows in complex geometries. Since the flow regime is the continuum to the slip and transitional regime with a moderate Knudsen number (Kn), the LBMs presently focused on feature the wall boundary treatment and the relaxation-time for modeling such flow regimes. The discussed micro flow (µ-flow) LBMs are based on the Bhatnagar-Gross-Krook (BGK) model and the multiple relaxation-time (MRT) model. The presently chosen µ-flow BGK LBM (BGK-1 model) consists… More >

Y. Inoue¹, R. Kobayashi¹, S. Ogata¹, T. Gotoh¹

CMES-Computer Modeling in Engineering & Sciences, Vol.63, No.2, pp. 137-162, 2010, DOI:10.3970/cmes.2010.063.137

Abstract Vibration of a single graphene and a pair of graphenes at micro meter scale induced by air flow is numerically simulated and examined by using a hybrid computational method starting from a microscopic level of description for the graphene. In order to bridge a huge gap in spatial and time scales in their motions, the carbon atoms of the graphene are represented by a small number of coarse grained particles, the fluid motion is described by the lattice Boltzmann equation and the momentum exchange at the boundary is treated by the time averaged immersed boundary method. It is found that… More >

K. Han¹, Y. T. Feng¹, D. R. J. Owen¹

CMES-Computer Modeling in Engineering & Sciences, Vol.59, No.1, pp. 1-30, 2010, DOI:10.3970/cmes.2010.059.001

Abstract A computational framework is established for effective modelling of fluid-thermal-particle interactions. The numerical procedures comprise the Discrete Element Method for simulating particle dynamics; the Lattice Boltzmann Method for modelling the mass and velocity field of the fluid flow; and the Discrete Thermal Element Method and the Thermal Lattice Boltzmann Method for solving the temperature field. The coupling of the three fields is realised through hydrodynamic interaction force terms. Selected numerical examples are provided to illustrate the applicability of the proposed approach. More >