Magdalini Ntetsika, Panayiotis Papadopoulos^*

CMES-Computer Modeling in Engineering & Sciences, Vol.129, No.3, pp. 1243-1258, 2021, DOI:10.32604/cmes.2021.017404

Abstract A new and computationally efficient version of the immersed boundary method, which is combined with the coarse-graining method, is introduced for modeling inextensible filaments immersed in low-Reynolds number flows. This is used to represent actin biopolymers, which are constituent elements of the cytoskeleton, a complex network-like structure that plays a fundamental role in shape morphology. An extension of the traditional immersed boundary method to include a stochastic stress tensor is also proposed in order to model the thermal fluctuations in the fluid at smaller scales. By way of validation, the response of a single, massless, inextensible semiflexible filament immersed in… More >

FRANCISCO CAPANI¹, EZEQUIEL SARACENO¹, VALERIA ROMINA BOTI¹, LAURA AON-BERTOLINO¹, JUAN CARLOS FERNÁNDEZ¹, FERNANDO GATO¹, MARIA SOL KRAUSE², LISANDRO GIRALDEZ³, MARK H. ELLISMAN⁴, HÉCTOR COIRINI^1,2

BIOCELL, Vol.32, No.1, pp. 1-8, 2008, DOI:10.32604/biocell.2008.32.001

Abstract Cellular and subcellular organization and distribution of actin filaments have been studied with various techniques. The use of fluorescence photo-oxidation combined with phalloidin conjugates with eosin has allowed the examination of the precise cellular and subcellular location of F-actin. Correlative fluorescence light microscopy and transmission electron microscopy studies of F-actin distribution are facilitated with this method for morphological and physiological studies. Because phalloidin-eosin is smaller than other markers, this method allows the analysis of the three-dimensional location of F-actin with high-resolution light microscopy, three-d serial sections reconstructions, and electron tomography. The combination of selective staining and three-dimensional reconstructions provide a… More >