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  • Open Access


    The whole-genome survey of Acer griseum, its polymorphic simple sequence repeats development and application


    BIOCELL, Vol.47, No.8, pp. 1907-1913, 2023, DOI:10.32604/biocell.2023.030191

    Abstract Background: Acer griseum Pax is an endangered species endemic to China with both ornamental and economic value. However, the lack of information on its genome size and characteristics hinders further work at the genome level. Methods: This paper applied bioinformatics methods to predict the characteristics and patterns of the A. griseum genome, providing an important basis for formulating its whole-genome sequencing scheme. This study also characterized the simple sequence repeats (SSRs) of A. griseum, laying the foundation for the development and application of genome-wide SSR markers. In this study, PE150 sequencing was performed by the BGI MGISEQ platform,… More >

  • Open Access


    BitmapAligner: Bit-Parallelism String Matching with MapReduce and Hadoop

    Mary Aksa1, Junaid Rashid2,*, Muhammad Wasif Nisar1, Toqeer Mahmood3, Hyuk-Yoon Kwon4, Amir Hussain5

    CMC-Computers, Materials & Continua, Vol.68, No.3, pp. 3931-3946, 2021, DOI:10.32604/cmc.2021.016081

    Abstract Advancements in next-generation sequencer (NGS) platforms have improved NGS sequence data production and reduced the cost involved, which has resulted in the production of a large amount of genome data. The downstream analysis of multiple associated sequences has become a bottleneck for the growing genomic data due to storage and space utilization issues in the domain of bioinformatics. The traditional string-matching algorithms are efficient for small sized data sequences and cannot process large amounts of data for downstream analysis. This study proposes a novel bit-parallelism algorithm called BitmapAligner to overcome the issues faced due to… More >

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