Limin Yin^#, Chang Liu^#, Zicong Liang, Dajun Liu, Guojun Feng, Zhishan Yan^*, Xiaoxu Yang^*

Phyton-International Journal of Experimental Botany, Vol.92, No.11, pp. 2981-2998, 2023, DOI:10.32604/phyton.2023.043151

Abstract The phenotype of a common bean plant is often closely related to its yield, and the yield of plants with reduced height or poor stem development during growth is low. Mutants serve as an essential gene resource for common bean breeding genetic research. Although model plants and crops are studied to comprehend the molecular mechanisms and genetic basis of plant phenotypes, the molecular mechanism of phenotypic variation in common beans remains underexplored. We here used the mutant ‘nts’ as material for transcriptome sequencing analysis. This mutant was obtained through ⁶⁰Co-γ irradiation from the common bean variety ‘A18’. Differentially expressed genes… More >

SHIMING YE^1,2,#, YUFENG ZHANG^3,#, TING LIU⁴, CONG WANG³, ZHENG YAN⁵, WANDONG SHE^2,*, HAIBING HUA^4,*

BIOCELL, Vol.47, No.9, pp. 1947-1964, 2023, DOI:10.32604/biocell.2023.029333

Abstract Background: Despite its widespread therapeutic use and effectiveness, the underlying pharmacologic mechanisms of Wendan decoction (WDD) and how it works to treat sudden deafness (SD) remain unclear. In this study, the pharmacological mechanisms of WDD underlying SD were analyzed using network pharmacology and molecular docking. Methods: The Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) was employed to identify the active compounds and target genes of WDD, and genes associated with SD were screened on five databases. RGUI conducted Gene Ontology (GO) functional and the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. A compound-target network was… More >

Zheng Li^1,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.26, No.3, pp. 1-1, 2023, DOI:10.32604/icces.2023.09141

Abstract Pore structures of carbonate reservoirs are complicated leading to the indistinguishable two-phase flow mechanisms of oil and brine. This work from the molecular perspective investigates the interfacial tension of oil-brine two-phase system, the contact angle of oil-brine-carbonatite three-phase system, as well as the microscale flow mechanisms of oil and brine in carbonate nanopores, especially focusing on the effects of ion species, salinity, and carbonate surface. The following conclusions can be drawn. (1) Oil-brine interfacial tension increases with salinity for the same ion species, and increases in the order of KCl, NaCl, CaCl2 and MgCl2 for the same salinity. The cation… More >

Zhiyang Yao¹, Shuling Wang¹, Yin Yu¹, Yile Hu^1,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.26, No.2, pp. 1-1, 2023, DOI:10.32604/icces.2023.09298

Abstract This study presents a method for modeling and analyzing the microstructure of short-fiber composites by using state-based PeriDynamic (PD). The micro-structure of short-fiber composites is obtained from MicroCT scanning which provides non-uniformly discretized meshes of short-fiber’s surface profile. In order to obtain the uniformly discretized PD model, a new layering algorithm is proposed to reconstruct the shortfiber microstructure. Furthermore, considering the anisotropy of short-fiber, a clustering algorithm based on machine learning is introduced to identify fibers and calculate their orientations. The PD interaction domain of a material point on the boundary is incomplete, it can be complemented by searching material… More >

Chuanlong Xu¹, Haidong Fan^1,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.25, No.3, pp. 1-1, 2023, DOI:10.32604/icces.2023.010110

Abstract Grain boundary (GB) is an important microstructure and plays a vital role in the mechanical properties of polycrystalline materials by GB migration and sliding. In this work, molecular dynamic (MD) simulations were performed to investigate the migration mechanisms of symmetric tilt grain boundaries (STGBs) in magnesium. A total of 15 STGBs with the rotation angle θ from 0° to 90° were studied under a pure shear loading. The results show that the GB migration mechanisms are significantly influenced by the GB structure. For small angle STGBs (θ<28°), the GB migration is mediated by twin nucleation from GB… More >

Qishan Huang¹, Haofei Zhou^2,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.25, No.3, pp. 1-1, 2023, DOI:10.32604/icces.2023.010014

Abstract Nanostructured metals contain vast amount of grain boundaries which are crucial to their mechanical behaviors. The plastic deformation mechanisms mediated by grain boundaries have been attracted increasing attentions in recent years. Our recent studies have been focused on using atomistic simulations to understand the grain boundary mediated plastic deformation mechanisms including deformation twinning initiated by dislocation nucleation from grain boundaries [1], cyclic plastic deformability governed by reversible slip of grain boundary dislocations [2], and extreme shear deformation of nanocrystals induced by twin boundary sliding [3]. We have also proposed a misorientation-dependent model to explain the transition between grain boundary migration… More >

Mao Li¹, Xiaobao Tian¹, Wentao Jiang¹, Qingyuan Wang¹, Haidong Fan^1,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.25, No.2, pp. 1-1, 2023, DOI:10.32604/icces.2023.09981

Abstract Poor ductility heavily limits the industrial application of magnesium (Mg) alloys, and pyramidal dislocations are an important deformation mode for ductility enhancement. In this work, discrete dislocation dynamics (DDD) simulations were performed to study the mechanical behavior and dislocation evolution of Mg singlecrystals compressed along c-axis. Especially, basal-transition and cross-slip algorithms of pyramidal dislocations were proposed and introduced in the DDD method. Simulation results show that basaltransition is an important mechanism for the strong strain hardening observed during c-axis compression of Mg single-crystals. Since the basal-transition events are thermally activated, increasing temperature leads to a high strain hardening rate.… More >

FENGMEI QIAN^1,2, PEIYAO REN², LI ZHAO², DANNA ZHENG², WENFANG HE³, JUAN JIN^3,*

BIOCELL, Vol.47, No.8, pp. 1853-1867, 2023, DOI:10.32604/biocell.2023.029353

Abstract Background: Diabetic nephropathy (DN) is a serious complication of diabetes with rising prevalence worldwide. We aimed to explore the anti-DN mechanisms of the compound celastrol derived from the medicinal plant Tripterygium wilfordii. Methods: Celastrol-related targets were obtained from Herbal Ingredients’ Targets (HIT) and GeneCards databases. DN-related targets were retrieved from GeneCards, DisGeNET, and Therapeutic Targets Database (TTD). A Protein-protein interaction (PPI) network was established using the Search Tool for the Retrieval of Interacting Genes (STRING) database. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed using ClusterProfiler. The cytoHubba plugin was used to select… More > Graphic Abstract

AN-SOO JANG^*

BIOCELL, Vol.47, No.8, pp. 1703-1708, 2023, DOI:10.32604/biocell.2023.028975

Abstract Exposure to air pollutants such as PM₁₀, PM_2.5, PM_0.1, O₃, CO, NO₂, and SO₂, and biological pollutants are important factors causing the evolution and furtherance of obstructive lung diseases (OLD), including asthma and chronic obstructive pulmonary disease (COPD). Asthma is the most frequent chronic inflammatory airway disease, characterized by breathlessness, wheezing, chest tightness, and cough, together with the presence of exaggerated expiratory airflow fluctuation that varies over time. COPD is a heterogeneous lung condition characterized by chronic respiratory symptoms such as dyspnea, cough, expectoration, and/or exacerbations due to abnormalities of the airways and/or alveoli that cause persistent, often progressive, airflow… More >

YAN ZHENG^1,2, SIHUI MA^3,4,*, KATSUHIKO SUZUKI⁴, HISANORI KATO³, HUIJUAN JIA^3,*

BIOCELL, Vol.47, No.8, pp. 1897-1906, 2023, DOI:10.32604/biocell.2023.027632

Abstract Mental disorders such as depression and anxiety inflict significant burdens on individuals and society. Commonly prescribed treatments often involve cognitive therapy and medications. However, for patients resistant to these conventional methods, alternative therapies like the Ketogenic Diet (KD) offer a promising avenue. KD and its key metabolite, β-hydroxybutyrate (BHB), have been hypothesized to alleviate mental disorders through anti-inflammatory actions, a crucial pathway in the pathophysiology of depression. This mini-review examines 15 clinical trials exploring the influence of KD and BHB on inflammation and their potential roles in managing mental disorders. Both human and animal studies were scrutinized to elucidate possible… More >