Yanpeng Wen^1,#, Rui Luo^1,#, Lili Li¹, Xiaotian Liang¹, Xuemei Hu¹, Ruxin Li¹, Zhiyan Wang¹, Fenglan Huang^1,2,3,4,5,*

Phyton-International Journal of Experimental Botany, Vol.92, No.11, pp. 3091-3112, 2023, DOI:10.32604/phyton.2023.030960

Abstract Castor (Ricinus communis L.) is one of the top 10 oil crops in the world, and inflorescence is a trait that directly affects its yield. Phospholipase C (PLCs) is involved in many plant activities and metabolic processes. To study the functions of PLC family genes in the regulation of the inflorescence development of the female line of Lm-type castor aLmAB2, we determined the expression levels of six PLC family genes of three types of inflorescences of aLmAB2 (isofemale line, female line, bisexual line) at different developmental stages. The results showed that the 6 genes of the castor PLC family had… More >

Xiaolan Guo^1,2, Jinbin Hu³, Shimei Yang⁴, Delu Wang^2,*, Jianbing Wang¹

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2683-2697, 2023, DOI:10.32604/phyton.2023.029820

Abstract The F3′5′H gene family plays an important role in regulating anthocyanin biosynthesis, abiotic stress, and hormone signaling. In this study, 14 F3′5′H genes were identified from the blueberry genome. The chromosomal distribution, physicochemical properties, F3′5′H domain, conserved motifs, cis-acting elements, and intron/exon compositions were analyzed. The functional prediction analysis of these VcF3′5′Hs indicated that their biological functions included light response and other secondary metabolites. The results of qRT-PCR showed that VcF3′5′Hs (especially VcF3′5′H4) were highly expressed at the ripening stage. Subcellular localization revealed that VcF3′5′H4 may be located in the endoplasmic reticulum. Co-expression analysis showed that the VcF3′5′H gene family… More >

Tongman Zhao^1,2,#, Yujie Fan^1,2,#, Yabing Cao^1,2, Xiaogai Zhao^1,2, Guoqiang Fan^1,2,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2473-2488, 2023, DOI:10.32604/phyton.2023.029469

Abstract Somatic embryogenesis receptor-like kinases (SERKs) are receptor-like proteins that contain leucine-rich repeats and are involved in various signaling pathways. This study identified SERK family members in the Paulownia fortunei genome and analyzed their characteristics and expression profiles using bioinformatics methods. We identified 12 SERK genes with relatively conserved gene structures and motifs that were distributed unevenly on eight Paulownia chromosomes. The gene promoters contained various cis-acting elements that regulated the expression of the PfSERK genes in response to hormones and abiotic stresses. Synteny analysis indicated that 10 segmental duplication events had occurred during evolution of the PfSERK family. The expression… More >

Li-yu Song^1,*, Su-ting Hsu²

International Journal of Mental Health Promotion, Vol.25, No.8, pp. 915-925, 2023, DOI:10.32604/ijmhp.2023.019349

Abstract Background: This study explored the personal recovery of consumers and their caregivers receiving the strength-based family intervention. Method: A three-year project was implemented with 43 dyads from 5 community psychiatric rehabilitation agencies in northern, central, and Southern Taiwan. This paper presents qualitative analysis with a focus on describing the experiences of personal recovery. To gain a deeper understanding of the participants’ personal experiences and perspectives, semi-structured in-depth interviews were conducted on three occasions (six months after the inception of the experiment, 18 months after, and when the participants left the services of this study). Over the three occasions, a total… More >

Yangyang Du¹, Yuanyuan Bao², Lu Zheng¹, Qinglong Tian¹, Xinyong Zhang^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.8, pp. 2325-2348, 2023, DOI:10.32604/phyton.2023.027642

Abstract Inorganic phosphate (Pi) is one of the main nutrients necessary for plant growth. Phosphate transporters mediate the acquisition, transport and recycling of phosphate, which is essential for plant growth and development. Although PHT1 has been reported in many plants at home and abroad, it is rarely studied in potato. Therefore, it is of great significance to study the PHT1 family members in order to understand the molecular response mechanism of potato in low phosphate state. In this study, a total of 6 potato PHT1 genes were identified and isolated. It was found that after the expression of different members of… More >

Amjed Al Fahoum^*, Ala’a Zyout, Hiam Alquran, Isam Abu-Qasmieh

CMC-Computers, Materials & Continua, Vol.76, No.1, pp. 1173-1193, 2023, DOI:10.32604/cmc.2023.038304

Abstract Complex proteins are needed for many biological activities. Folding amino acid chains reveals their properties and functions. They support healthy tissue structure, physiology, and homeostasis. Precision medicine and treatments require quantitative protein identification and function. Despite technical advances and protein sequence data exploration, bioinformatics’ “basic structure” problem—the automatic deduction of a protein’s properties from its amino acid sequence—remains unsolved. Protein function inference from amino acid sequences is the main biological data challenge. This study analyzes whether raw sequencing can characterize biological facts. A massive corpus of protein sequences and the Globin-like superfamily’s related protein families generate a solid vector representation.… More >

Minghui Niu^1,#, Heng Zhang^1,#, Xiangyang Li¹, Zhibao Hu¹, Hongjiao Zhang^2,3, Zhiru Xu^2,3, Chunpu Qu^1,4,*, Guanjun Liu^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.7, pp. 2001-2015, 2023, DOI:10.32604/phyton.2023.029350

Abstract KANADI (KAN) is a plant-specific gene that controlled the polarity development of lateral organs. It mainly acted on the abaxial characteristics of plants to make the lateral organs asymmetrical. However, it had been less identified in woody plants. In this study, the members of the KAN gene family in Populus trichocarpa were identified and analyzed using the bioinformatics method. The results showed that a total of 8 KAN family members were screened out, and each member contained the unique GARP domain and conserved region of the family proteins. Phylogenetic analysis and their gene structures revealed that all KAN genes from… More >

QIAOLING WU^1,2, ZHAOLEI CUI³, HONGMEI XIA¹, SHAN JIANG¹, JING BAI⁴, ZHUO SHAO⁴, YANG SUN^1,*

BIOCELL, Vol.47, No.5, pp. 1039-1050, 2023, DOI:10.32604/biocell.2023.027494

Abstract Background: Ovarian cancer (OC) is a leading cause of gynecological cancer-linked deaths worldwide. Exosomal miR-1825 and its target gene C-type lectin domain family 5 member A (CLEC5A) are associated with tumorigenesis in cancers that was further probed. Methods: Exosomal miR-1825 expression in exosomes and its impact on overall survival (OS) prediction were determined using Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) data. Target genes of miR-1825 were searched in five prediction databases and prognostically significant differentially expressed genes were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were carried out. The… More >

Isam Abu-Qasmieh, Amjed Al Fahoum^*, Hiam Alquran, Ala’a Zyout

CMC-Computers, Materials & Continua, Vol.75, No.2, pp. 3971-3991, 2023, DOI:10.32604/cmc.2023.037431

Abstract Proteins are essential for many biological functions. For example, folding amino acid chains reveals their functionalities by maintaining tissue structure, physiology, and homeostasis. Note that quantifiable protein characteristics are vital for improving therapies and precision medicine. The automatic inference of a protein’s properties from its amino acid sequence is called “basic structure”. Nevertheless, it remains a critical unsolved challenge in bioinformatics, although with recent technological advances and the investigation of protein sequence data. Inferring protein function from amino acid sequences is crucial in biology. This study considers using raw sequencing to explain biological facts using a large corpus of protein… More >

Peiling Wang^1,#, Xiaohong Xu^2,#, Yong Li², Hecui Zhang¹, Xuejie Zhang³, Siru Zhou¹, Yimei Liu¹, Yunyan Feng¹, Tonghong Zuo¹, Liquan Zhu^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.5, pp. 1469-1492, 2023, DOI:10.32604/phyton.2023.027133

Abstract Phytocyanin (PC) is a class of plant-specific blue copper proteins involved in electron transport, plant growth, development, and stress resistance. However, PC proteins have not been systematically evaluated in tobacco plants. We determined the whole-genome sequences of the PC family in the tobacco cultivar ‘K326.’ The transcriptome data were used to analyze the expression of the NtPC family at different development stages and tissue-specific genes. Real-time fluorescence quantitative analysis was used to analyze the expression of the NtPC gene family under low temperature and methyl jasmonate stress. The tobacco NtPC family contained 110 members and was divided into four subfamilies:… More >