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  • Open Access

    ARTICLE

    Machine learning and bioinformatics to identify biomarkers in response to Burkholderia pseudomallei infection in mice

    YAO FANG1,2,#, FEI XIA1,#, FEIFEI TIAN3, LEI QU1, FANG YANG1, JUAN FANG1,2, ZHENHONG HU1,*, HAICHAO LIU1,*

    BIOCELL, Vol.48, No.4, pp. 613-621, 2024, DOI:10.32604/biocell.2024.031539

    Abstract Objective: In the realm of Class I pathogens, Burkholderia pseudomallei (BP) stands out for its propensity to induce severe pathogenicity. Investigating the intricate interactions between BP and host cells is imperative for comprehending the dynamics of BP infection and discerning biomarkers indicative of the host cell response process. Methods: mRNA extraction from BP-infected mouse macrophages constituted the initial step of our study. Employing gene expression arrays, the extracted RNA underwent conversion into digital signals. The percentile shift method facilitated data processing, with the identification of genes manifesting significant differences accomplished through the application of the t-test. Subsequently, a comprehensive analysis… More >

  • Open Access

    ARTICLE

    Einstein Hybrid Structure of q-Rung Orthopair Fuzzy Soft Set and Its Application for Diagnosis of Waterborne Infectious Disease

    Rana Muhammad Zulqarnain1, Hafiz Khalil ur Rehman2, Imran Siddique3, Hijaz Ahmad4,5, Sameh Askar6, Shahid Hussain Gurmani1,*

    CMES-Computer Modeling in Engineering & Sciences, Vol.139, No.2, pp. 1863-1892, 2024, DOI:10.32604/cmes.2023.031480

    Abstract This research is devoted to diagnosing water-borne infectious diseases caused by floods employing a novel diagnosis approach, the Einstein hybrid structure of q-rung orthopair fuzzy soft set. This approach integrates parts of fuzzy logic and soft set theory to develop a robust alternative for disease detection in stressful situations, especially in areas affected by floods. Compared to the traditional intuitionistic fuzzy soft set and Pythagorean fuzzy soft set, the q-rung orthopair fuzzy soft set (q-ROFSS) adequately incorporates unclear and indeterminate facts. The major objective of this investigation is to formulate the q-rung orthopair fuzzy soft Einstein hybrid weighted average (q-ROFSEHWA)… More >

  • Open Access

    REVIEW

    Exosomes in viral infection: Effects for pathogenesis and treatment strategies

    FATEMEH HEIDARI1,2, REIHANEH SEYEDEBRAHIMI1,2, PIAO YANG3, MOHSEN ESLAMI FARSANI1,2, SHIMA ABABZADEH2,4, NASER KALHOR5, HAMED MANOOCHEHRI6, MOHSEN SHEYKHHASAN7,*, MARYAM AZIMZADEH8,9,*

    BIOCELL, Vol.47, No.12, pp. 2597-2608, 2023, DOI:10.32604/biocell.2023.043351

    Abstract Exosomes are small vesicles that carry molecules from one cell to another. They have many features that make them interesting for research, such as their stability, low immunogenicity, size of the nanoscale, toxicity, and selective delivery. Exosomes can also interact with viruses in diverse ways. Emerging research highlights the significant role of exosomes in viral infections, particularly in the context of diseases like COVID-19, HIV, HBV and HCV. Understanding the intricate interplay between exosomes and the human immune system holds great promise for the development of effective antiviral therapies. An important aspect is gaining clarity on how exosomes influence the… More >

  • Open Access

    REVIEW

    Reservoir of human immunodeficiency virus in the brain: New insights into the role of T cells

    YINGDONG ZHANG1,2, MING CHU1,2,*, HONGZHOU LU3,*

    BIOCELL, Vol.47, No.12, pp. 2591-2595, 2023, DOI:10.32604/biocell.2023.030331

    Abstract Human immunodeficiency virus (HIV) infection of the central nervous system (CNS) has attracted significant attention because it contributes to severe complications of acquired immunodeficiency syndrome (AIDS) and seriously impairs the life quality of infected patients. In this review, we briefly describe the latent infection of HIV in CNS and focus on the role of the important immune cells, such as T cells, in the formation and maintenance of the HIV reservoir in CNS. This review explores the mechanisms by which T cells enter CNS and establish latent infection of HIV in the CNS. In conclusion, we summarize the role of… More > Graphic Abstract

    Reservoir of human immunodeficiency virus in the brain: New insights into the role of T cells

  • Open Access

    REVIEW

    The role of periodontal disease in atherosclerotic cardiovascular disease

    XIWEI ZHAO1,#, JINSONG WANG1,2,#, YIFAN XU1, JIAN ZHOU5,*, LEI HU1,3,4,*

    BIOCELL, Vol.47, No.7, pp. 1431-1438, 2023, DOI:10.32604/biocell.2023.028217

    Abstract Atherosclerotic cardiovascular disease (ASCVD) includes a group of disorders of the heart and blood vessels and accounts for major morbidity and premature death worldwide. Periodontitis is a chronic inflammatory disease with the gradual destruction of supporting tissues around the teeth, including gingiva, periodontal ligament, alveolar bone, and cementum. Periodontitis has been found to potentially increase the risk of ASCVD. Generally, oral microorganisms and inflammation are the major factors for periodontitis to the incidence of ASCVD. Recently, evidence has shown that the loss of masticatory function is another important factor of periodontitis to the incidence of ASCVD. In this review, we… More > Graphic Abstract

    The role of periodontal disease in atherosclerotic cardiovascular disease

  • Open Access

    REVIEW

    A Systematic Literature Review of Deep Learning Algorithms for Segmentation of the COVID-19 Infection

    Shroog Alshomrani*, Muhammad Arif, Mohammed A. Al Ghamdi

    CMC-Computers, Materials & Continua, Vol.75, No.3, pp. 5717-5742, 2023, DOI:10.32604/cmc.2023.038059

    Abstract Coronavirus has infected more than 753 million people, ranging in severity from one person to another, where more than six million infected people died worldwide. Computer-aided diagnostic (CAD) with artificial intelligence (AI) showed outstanding performance in effectively diagnosing this virus in real-time. Computed tomography is a complementary diagnostic tool to clarify the damage of COVID-19 in the lungs even before symptoms appear in patients. This paper conducts a systematic literature review of deep learning methods for classifying the segmentation of COVID-19 infection in the lungs. We used the methodology of systematic reviews and meta-analyses (PRISMA) flow method. This research aims… More >

  • Open Access

    ARTICLE

    Deep Learning ResNet101 Deep Features of Portable Chest X-Ray Accurately Classify COVID-19 Lung Infection

    Sobia Nawaz1, Sidra Rasheed2, Wania Sami3, Lal Hussain4,5,*, Amjad Aldweesh6,*, Elsayed Tag eldin7, Umair Ahmad Salaria8,9, Mohammad Shahbaz Khan10

    CMC-Computers, Materials & Continua, Vol.75, No.3, pp. 5213-5228, 2023, DOI:10.32604/cmc.2023.037543

    Abstract This study is designed to develop Artificial Intelligence (AI) based analysis tool that could accurately detect COVID-19 lung infections based on portable chest x-rays (CXRs). The frontline physicians and radiologists suffer from grand challenges for COVID-19 pandemic due to the suboptimal image quality and the large volume of CXRs. In this study, AI-based analysis tools were developed that can precisely classify COVID-19 lung infection. Publicly available datasets of COVID-19 (N = 1525), non-COVID-19 normal (N = 1525), viral pneumonia (N = 1342) and bacterial pneumonia (N = 2521) from the Italian Society of Medical and Interventional Radiology (SIRM), Radiopaedia, The… More >

  • Open Access

    ARTICLE

    Identification of Resistance to Pathogenesis Related Protein GmPR1L in Tobacco Botrytis cinerea Infection

    Yeyao Du1,#, Ye Zhang2,#, Yang Song1, Zhuo Zhang1, Sujie Fan1, Hanzhu Zhang1, Piwu Wang1,*

    Phyton-International Journal of Experimental Botany, Vol.92, No.6, pp. 1907-1920, 2023, DOI:10.32604/phyton.2023.027607

    Abstract Soybean (Glycine max (Linn.) Merr.) annual leguminous crop is cultivated all over the world. The occurrence of diseases has a great impact on the yield and quality of soybean. In this study, based on the RNA-seq of soybean variety M18, a complete CDS (Coding sequence) GmPR1L of the pathogenesis-related protein 1 family was obtained, which has the ability to resist fungal diseases. The overexpression vector and interference expression vector were transferred into tobacco NC89, and the resistance of transgenic tobacco (Nicotiana tabacum L.) to Botrytis cinerea infection was identified. The results show that: Compared with the control, the activities of… More >

  • Open Access

    ARTICLE

    Study of Fractional Order Dynamical System of Viral Infection Disease under Piecewise Derivative

    Kamal Shah1,2, Hafsa Naz2, Thabet Abdeljawad1,3,*, Bahaaeldin Abdalla1

    CMES-Computer Modeling in Engineering & Sciences, Vol.136, No.1, pp. 921-941, 2023, DOI:10.32604/cmes.2023.025769

    Abstract This research aims to understand the fractional order dynamics of the deadly Nipah virus (NiV) disease. We focus on using piecewise derivatives in the context of classical and singular kernels of power operators in the Caputo sense to investigate the crossover behavior of the considered dynamical system. We establish some qualitative results about the existence and uniqueness of the solution to the proposed problem. By utilizing the Newtonian polynomials interpolation technique, we recall a powerful algorithm to interpret the numerical findings for the aforesaid model. Here, we remark that the said viral infection is caused by an RNA type virus… More > Graphic Abstract

    Study of Fractional Order Dynamical System of Viral Infection Disease under Piecewise Derivative

  • Open Access

    ARTICLE

    The microRNA pathway activation in insect cell model upon Autographa californica multiple nucleopolyhedrovirus infection

    QIAOJIN JIA1,2, YUEJUN FU1,*

    BIOCELL, Vol.47, No.3, pp. 627-645, 2023, DOI:10.32604/biocell.2023.026182

    Abstract Background: The immune system of insects exerts fundamentally different antiviral mechanisms than mammals. MicroRNAs (miRNAs) play vital roles in developing insect antiviral immunity. MiRNAs expression profiles of insects changed significantly during baculovirus infection. Methods: Differential expression profiles of miRNAs in Spodoptera frugiperda were monitored by next-generation sequencing (NGS) and RT-qPCR during Autographa californica multiple nucleopolyhedrovirus (AcMNPV) infection. The transcription levels of genes were detected by RT-qPCR. The 50% tissue culture infective dose (TCID50) endpoint dilution assay was used to determine the proliferation of progeny virus. Results: NGS revealed that 49 miRNAs were differentially expressed in Sf9 cells, and 10 of… More >

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