Jin Yeon Cho¹, Yun Hyuk Choi², You Me Song³, Chang Sik Kim⁴

The International Conference on Computational & Experimental Engineering and Sciences, Vol.4, No.3, pp. 151-158, 2007, DOI:10.3970/icces.2007.004.151

Abstract In this work, PDSL(pre-detection sort last) and SDSL(strip-wise decomposition sort last) parallel visualization algorithms are proposed for efficient visualization of massive data generated from large-scale parallel finite element analysis through investigating the characteristics of distributed parallel finite element analysis procedure. The proposed parallel visualization algorithms are based on the sort last approach, and designed to be highly compatible with the characteristics of domain-wise computation in parallel finite element analysis. To investigate the performances of proposed algorithms, in-house software is developed by applying the binary tree network communication pattern along with the proposed sorting algorithms, and benchmarking test for parallel visualization… More >

T. Furumura¹, L. Chen²

CMES-Computer Modeling in Engineering & Sciences, Vol.6, No.2, pp. 153-168, 2004, DOI:10.3970/cmes.2004.006.153

Abstract Recent developments of the Earth Simulator, a high-performance parallel computer, has made it possible to realize realistic 3D simulations of seismic wave propagations on a regional scale including higher frequencies. Paralleling this development, the deployment of dense networks of strong ground motion instruments in Japan (K-NET and KiK-net) has now made it possible to directly visualize regional seismic wave propagation during large earthquakes. Our group has developed an efficient parallel finite difference method (FDM) code for modeling the seismic wavefield and a 3D visualization technique, both suitable for implementation on the Earth Simulator. Large-scale 3D simulations of seismic wave propagation… More >

A. Rama Mohan Rao¹, T.V.S.R. Appa Rao², B. Dattaguru³

CMES-Computer Modeling in Engineering & Sciences, Vol.5, No.3, pp. 213-234, 2004, DOI:10.3970/cmes.2004.005.213

Abstract This paper presents an algorithm for automatic partitioning of unstructured meshes for parallel finite element computations employing float-encoded genetic algorithms (FEGA). The problem of mesh partitioning is represented in such a way that the number of variables considered in the genome (chromosome) construction is constant irrespective of the size of the problem. In order to accelerate the computational process, several acceleration techniques like constraining the search space, local improvement after initial global partitioning have been attempted. Finally, micro float-encoded genetic algorithms have been developed to accelerate the computational process. More >

Z. Karakaya¹, B. Baranoğlu², B. Çetin³, A. Yazici⁴

CMES-Computer Modeling in Engineering & Sciences, Vol.104, No.3, pp. 227-249, 2015, DOI:10.3970/cmes.2015.104.227

Abstract A new formulation for tracking multiple particles in slow viscous flow for microfluidic applications is presented. The method employs the manipulation of the boundary element matrices so that finally a system of equations is obtained relating the rigid body velocities of the particle to the forces applied on the particle. The formulation is specially designed for particle trajectory tracking and involves successive matrix multiplications for which SMP (Symmetric multiprocessing) parallelisation is applied. It is observed that present formulation offers an efficient numerical model to be used for particle tracking and can easily be extended for multiphysics simulations in which several… More >

T. Kipouros¹, D.M. Jaeggi², W.N. Dawes³, G.T. Parks²,A.M. Savill¹, P.J. Clarkson²

CMES-Computer Modeling in Engineering & Sciences, Vol.37, No.1, pp. 1-44, 2008, DOI:10.3970/cmes.2008.037.001

Abstract An approach to support the computational aerodynamic design process is presented and demonstrated through the application of a novel multi-objective variant of the Tabu Search optimization algorithm for continuous problems to the aerodynamic design optimization of turbomachinery blades. The aim is to improve the performance of a specific stage and ultimately of the whole engine. The integrated system developed for this purpose is described. This combines the optimizer with an existing geometry parameterization scheme and a well-established CFD package. The system's performance is illustrated through case studies -- one two-dimensional, one three-dimensional -- in which flow characteristics important to the… More >

J. S. Hesthaven¹, T. Warburton²

CMES-Computer Modeling in Engineering & Sciences, Vol.5, No.5, pp. 395-408, 2004, DOI:10.3970/cmes.2004.005.395

Abstract We discuss the formulation, validation, and parallel performance of a high-order accurate method for the time-domain solution of the three-dimensional Maxwell's equations on general unstructured grids. Attention is paid to the development of a general discontinuous element/penalty approximation to Maxwell's equations and a locally divergence free form of this. We further discuss the motivation for using a nodal Lagrangian basis for the accurate and efficient representation of solutions and operators. The performance of the scheme is illustrated by solving benchmark problems as well as large scale scattering applications. More >

Wanil Byun¹, Seung Jo Kim²

CMES-Computer Modeling in Engineering & Sciences, Vol.86, No.6, pp. 551-576, 2012, DOI:10.3970/cmes.2012.086.551

Abstract A structural eigensolver for large-scale finite element analysis is developed. The algorithms and data structures implemented in this paper are well suited for a distributed memory environment. As an eigenvalue extracting algorithm, the well-known M orthogonal block Lanczos iteration incorporated with a parallel multifrontal solver (PMFS) was chosen. Basically, for the better performance of this algorithm in parallel computation, Lanczos vector allocation, mass matrix multiplication, and M inner product procedures were efficiently implemented. And the PMFS for a linear equation which is the most time-consuming part during Lanczos iterations was improved. The idea was to optimize network topologies of parallel… More >

Jong Keun Moon¹, Seung Jo Kim²

CMES-Computer Modeling in Engineering & Sciences, Vol.67, No.3, pp. 239-264, 2010, DOI:10.3970/cmes.2010.067.239

Abstract Large structural problems with high precision and complexity require a high-performance computation using the efficient parallel algorithm. The purpose of this paper is to present the parallel performance of thermal-structural coupled analysis tested on a parallel cluster system. In the coupled analysis, the heat transfer analysis is carried out, and then the structural analysis is performed based on temperature distribution. For the automatic and efficient connection of two parallel analysis modules, the several communication patterns were studied. The parallel performance was demonstrated for the sample and the real application problems, such as a laminated composite material by the DNS(Direct Numerical… More >

Ji Joong Moon¹, Seung Jo Kim¹, Minhyung Lee²

CMES-Computer Modeling in Engineering & Sciences, Vol.59, No.3, pp. 275-300, 2010, DOI:10.3970/cmes.2010.059.275

Abstract This paper describes the parallelization of contact/impact simulation for fracture modeling of brittle materials using a node separation scheme (NSS). We successfully demonstrated the fracture modeling of brittle materials using a cohesive fracture model. Since a NSS continuously generates new free surfaces as the computation progresses, the methodology requires increased computational time. To perform a simulation within a reasonable time period, a parallelization study is conducted. Particular methods for effective parallelization, especially for brittle materials, are described in detail. The crucial and most difficult strategy is the management of the data structure and communication needed to handle new contact nodes… More >

Tae-Hyuk Ahn¹, Layne T. Watson^1,2, Yang Cao^1,1, Clifford A. Shaffer¹, William T. Baumann³

CMES-Computer Modeling in Engineering & Sciences, Vol.51, No.1, pp. 27-52, 2009, DOI:10.3970/cmes.2009.051.027

Abstract For biochemical systems, where some chemical species are represented by small numbers of molecules, discrete and stochastic approaches are more appropriate than continuous and deterministic approaches. The continuous deterministic approach using ordinary differential equations is adequate for understanding the average behavior of cells, while the discrete stochastic approach accurately captures noisy events in the growth-division cycle. Since the emergence of the stochastic simulation algorithm (SSA) by Gillespie, alternative algorithms have been developed whose goal is to improve the computational efficiency of the SSA. This paper explains and empirically compares the performance of some of these SSA alternatives on a realistic… More >