E. Kavitha^1,*, R. Tamilarasan², N. Poonguzhali³, M. K. Jayanthi Kannan⁴

Computer Systems Science and Engineering, Vol.41, No.3, pp. 1027-141, 2022, DOI:10.32604/csse.2022.020634

Abstract Gene expression refers to the process in which the gene information is used in the functional gene product synthesis. They basically encode the proteins which in turn dictate the functionality of the cell. The first step in gene expression study involves the clustering usage. This is due to the reason that biological networks are very complex and the genes volume increases the comprehending challenges along with the data interpretation which itself inhibit vagueness, noise and imprecision. For a biological system to function, the essential cellular molecules must interact with its surrounding including RNA, DNA, metabolites and proteins. Clustering methods will… More >

ALI H. ABU ALMAATY¹, BASMA M. HENDAM², FAYEZ ALTHOBAITI³, EMAN FAYAD^3,*, YASMIN M. ABD EL-AZIZ¹

BIOCELL, Vol.46, No.1, pp. 219-234, 2022, DOI:10.32604/biocell.2022.017623

Abstract The hepatotoxic effect of potassium bromide (KBr) on rat liver tissues were determined, as well as the potential protective effect of Tegillaraca granosa (T. granosa) flesh body extract. Twenty adult male albino rats were equally distributed into four groups; Group (I) treated with physiological saline (control group), Group (II) was orally gavaged by 200 mg/kg of T. granosa body extract day after day, Group (III) was intoxicated by KBr (150 mg/kg bwt day after day orally) and finally, Group (IV) was given a combination of T. granosa flesh body extract plus KBr with similar doses in the second and third… More >

Phimmarin Keerin¹, Tossapon Boongoen^2,*

CMC-Computers, Materials & Continua, Vol.70, No.2, pp. 4009-4025, 2022, DOI:10.32604/cmc.2022.020261

Abstract The problem of missing values has long been studied by researchers working in areas of data science and bioinformatics, especially the analysis of gene expression data that facilitates an early detection of cancer. Many attempts show improvements made by excluding samples with missing information from the analysis process, while others have tried to fill the gaps with possible values. While the former is simple, the latter safeguards information loss. For that, a neighbour-based (KNN) approach has proven more effective than other global estimators. The paper extends this further by introducing a new summarization method to the KNN model. It is… More >

CÜNEYT UÇARLI^*

BIOCELL, Vol.45, No.6, pp. 1673-1685, 2021, DOI:10.32604/biocell.2021.016316

Abstract RAV (Related to ABI3/VP1) transcription factors are unique members of the AP2-ERF superfamily with AP2 and B3 domains and play important roles in the regulation of seed germination, plant growth, and stress response. In the study, 7 RAV genes, named HvRAVs, were identified in barley based on the available genome sequences. While five of the seven HvRAVs were located on chromosome 3, HvRAV5 and HvRAV7 were located on chromosome 1 and 4, respectively. Six of the predicted HvRAVs were intron-less, except HvRAV2, which had one intron. HvRAV proteins have shown basic, instable, and hydrophilic properties. The AP2 domain specific RAYD… More >

MIZUNA YANO¹, YUTA UMEHARA¹, TOMOKAZU KUDO¹, TAKAO NAKAMURA², TADASHI KOSAWADA¹, ATSUYOSHI NISHINA³, MASAKI SAZUKA⁴, DAISUKE SATO^1,*, ZHONGGANG FENG^1,*

BIOCELL, Vol.45, No.5, pp. 1213-1229, 2021, DOI:10.32604/biocell.2021.016281

Abstract While fatty acids play essential roles in the physiology of the myocardium, conventional culture media contain little lipid. We previously revealed that rat neonatal myocardium mainly contains docosahexaenoic (DHA), linoleic (LA), and arachidonic (AA) acids as polyunsaturated fatty acids (PUFAs), and these contents in cultured cardiomyocytes derived from fetal rats were markedly lower than those in the neonatal myocardium. In this study, we first assessed the effects of supplementation of DHA, LA, or AA on the fatty acid contents and the percentage change of contractile area in primarily cultured rat cardiomyocytes. Based on this assessment, we then evaluated the effects… More >

Mohammed Ali Ashehri^*

Phyton-International Journal of Experimental Botany, Vol.90, No.6, pp. 1749-1762, 2021, DOI:10.32604/phyton.2021.016290

Abstract In most of Arabian courtiers Rhazya stricta is extensively utilized in public medicine for several diseases treatment. In this study, crude alkaloid extract of R. stricta (CAERS) coated with silver nanoparticles (CAERS-AgNPs) as potential treatment against diabetes in DM animal model was evaluated. Swiss albino male rats (n = 80) were injected with STZ to induce Diabetes Mellitus type-2 (DM). DM-rats were injected different doses of CAERS or CAERS-nanoparticles (CAERS-NPs) for 2 months. The results exhibited that mRNA expression of insulin and insulin receptor was down-regulated, activity levels of antioxidant enzymes were decreased, generation of ROS mediated DNA adducts and apoptosis in… More >

Mengyuan Dong^#, Rong Sun^#, Qianhui Yang, Lantian Zhang, Yangying Yong, Yunxia Fang, Xian Zhang, Xiaoqin Zhang^*, Dawei Xue^*

Phyton-International Journal of Experimental Botany, Vol.90, No.6, pp. 1589-1598, 2021, DOI:10.32604/phyton.2021.017465

Abstract In recent years, zinc oxide nanoparticles (ZnO NPs) have been widely used as zinc fertilizers and pesticides. The use of ZnO NPs in this way can provide benefits to humans, but also has potential risks. ZnO NPs inevitably enter the environment during their production and use, which affects the ecological environment and crop growth. In order to investigate the phenotype, physiology, and gene expression of barley (Hordeum vulgare L.) seedlings under ZnO NPs stress, the barely cultivars ZJU3 (P21), Golden Promise (GP) and L23 were chosen for study. Different ZnO NPs concentrations were applied to compare the physiological and biochemical… More >

Huan Zhang^1,2, Jiliu Zhou^1,2,*, Xi Wu²

CMES-Computer Modeling in Engineering & Sciences, Vol.127, No.3, pp. 1151-1175, 2021, DOI:10.32604/cmes.2021.015462

Abstract In hardware Trojan detection technology, destructive reverse engineering can restore an original integrated circuit with the highest accuracy. However, this method has a much higher overhead in terms of time, effort, and cost than bypass detection. This study proposes an algorithm, called mixed-feature gene expression programming, which applies non-destructive reverse engineering to the chip with bypass detection data. It aims to recover the original integrated circuit hardware, or else reveal the unknown circuit design in the chip. More >

Shaoyi Ruan^1,2,3,#, Haowen Luo^1,2,3,#, Xiaoyan Zeng^1,2,3,#, Runhao Wen^1,2,3, Feida Wu^1,2,3, Xiangru Tang^1,2.*

Phyton-International Journal of Experimental Botany, Vol.90, No.4, pp. 1273-1283, 2021, DOI:10.32604/phyton.2021.015610

Abstract Vermicompost is an organic fertilizer contains multiple nutrient elements. However, the application of vermicompost in fragrant rice production is rarely reported. In order to study the effects of vermicompost application on fragrant rice (Oryza sativa L.) seedling performances, present study was conducted with two fragrant rice cultivars and four vermicompost rate treatments (0 (CK), 2.5 (Wo1), 5.0 (Wo2) and 10.0 (Wo3) g kg⁻¹ ). The results showed that vermicompost treatments significantly increased dry weight of fragrant rice seedling by 8.31–32.56% compared with CK. 21.10–59.13% higher net photosynthetic rates and 10.66–59.16% higher chlorophyll contents (chlorophyll a, chlorophyll b and total chlorophyll)… More >

Lin Zhang^1,2,*, Dong Xie¹, Zhong Bian¹, Yiting Zou¹, Han Zhou¹, Wenlu Cai¹, Hadi Yeilaghi¹, Xiaolei Fan^1,2, Changquan Zhang^1,2, Qiaoquan Liu^1,2,*

Phyton-International Journal of Experimental Botany, Vol.90, No.3, pp. 773-787, 2021, DOI:10.32604/phyton.2021.015229

Abstract In recent years, some super hybrid rice varieties were bred with strong culms and large panicles, which are mainly contributed by the ipa1-2D locus. A gain-of-function allele of OsSPL14 is the ipa1-2D and it can greatly increase the panicle primary branch number. However, the key downstream genes mediating this trait variation are not fully explored. In this study, we developed high-quality near-isogenic lines (NILs) with a difference of only 30 kb chromosomal segment covering the ipa1-2D locus. Using the NILs, we explored the impact of ipa1-2D on five sequential stages of early inflorescence development, and found that the locus can… More >