Huan Zhang^1,2, Jiliu Zhou^1,2,*, Xi Wu²

CMES-Computer Modeling in Engineering & Sciences, Vol.127, No.3, pp. 1151-1175, 2021, DOI:10.32604/cmes.2021.015462 - 24 May 2021

Abstract In hardware Trojan detection technology, destructive reverse engineering can restore an original integrated circuit with the highest accuracy. However, this method has a much higher overhead in terms of time, effort, and cost than bypass detection. This study proposes an algorithm, called mixed-feature gene expression programming, which applies non-destructive reverse engineering to the chip with bypass detection data. It aims to recover the original integrated circuit hardware, or else reveal the unknown circuit design in the chip. More >

Shaoyi Ruan^1,2,3,#, Haowen Luo^1,2,3,#, Xiaoyan Zeng^1,2,3,#, Runhao Wen^1,2,3, Feida Wu^1,2,3, Xiangru Tang^1,2.*

Phyton-International Journal of Experimental Botany, Vol.90, No.4, pp. 1273-1283, 2021, DOI:10.32604/phyton.2021.015610 - 27 April 2021

Abstract Vermicompost is an organic fertilizer contains multiple nutrient elements. However, the application of vermicompost in fragrant rice production is rarely reported. In order to study the effects of vermicompost application on fragrant rice (Oryza sativa L.) seedling performances, present study was conducted with two fragrant rice cultivars and four vermicompost rate treatments (0 (CK), 2.5 (Wo1), 5.0 (Wo2) and 10.0 (Wo3) g kg⁻¹ ). The results showed that vermicompost treatments significantly increased dry weight of fragrant rice seedling by 8.31–32.56% compared with CK. 21.10–59.13% higher net photosynthetic rates and 10.66–59.16% higher chlorophyll contents (chlorophyll a, chlorophyll b More >

Lin Zhang^1,2,*, Dong Xie¹, Zhong Bian¹, Yiting Zou¹, Han Zhou¹, Wenlu Cai¹, Hadi Yeilaghi¹, Xiaolei Fan^1,2, Changquan Zhang^1,2, Qiaoquan Liu^1,2,*

Phyton-International Journal of Experimental Botany, Vol.90, No.3, pp. 773-787, 2021, DOI:10.32604/phyton.2021.015229 - 30 March 2021

Abstract In recent years, some super hybrid rice varieties were bred with strong culms and large panicles, which are mainly contributed by the ipa1-2D locus. A gain-of-function allele of OsSPL14 is the ipa1-2D and it can greatly increase the panicle primary branch number. However, the key downstream genes mediating this trait variation are not fully explored. In this study, we developed high-quality near-isogenic lines (NILs) with a difference of only 30 kb chromosomal segment covering the ipa1-2D locus. Using the NILs, we explored the impact of ipa1-2D on five sequential stages of early inflorescence development, and found that the… More >

Qian Sun^1,2, Toshihiko Yamada³, Yulai Han^2,*, Tetsuo Takano^1,*

Phyton-International Journal of Experimental Botany, Vol.90, No.3, pp. 827-836, 2021, DOI:10.32604/phyton.2021.013805 - 30 March 2021

Abstract The lignocellulosic crop Miscanthus spp. has been identified as a good candidate for biomass production. The responses of Miscanthus sinensis Anderss. to salinity were studied to satisfy the needs for high yields in marginal areas and to avoid competition with food production. The results indicated that the relative advantages of the tolerant accession over the sensitive one under saline conditions were associated with restricted Na⁺ accumulation in shoots. Seedlings of two accessions (salt-tolerant ‘JM0119’ and salt-sensitive ‘JM0099’) were subjected to 0 (control), 100, 200, and 300 mM NaCl stress to better understand the salt-induced biochemical responses of… More >

Xiaohang He¹, Minjie Liu², Zhengwu Fang¹, Dongfang Ma^1,2,3,*, Yilin Zhou^1,3,*, Junliang Yin¹

Phyton-International Journal of Experimental Botany, Vol.90, No.3, pp. 971-986, 2021, DOI:10.32604/phyton.2021.012726 - 30 March 2021

Abstract Plant AT-rich sequence and zinc-binding protein (PLATZ) is a plant transcription factor that has been studied in corn. PLATZ can non-specifically bind to sequences rich in A/T bases to induce transcriptional repression. It is involved in the regulation of dehydration tolerance in seeds. In this study, we performed bioinformatics analysis to identify and characterize wheat PLATZ(TaPLATZ)genes. We identified 49 wheat PLATZ genes by searching the wheat genome by using known PLATZ gene sequences from rice, Arabidopsis, and maize. Phylogenetic analysis on PLATZ gene sequences from different species was performed. We found that PLATZs could be divided into three groups.… More >

Hongfei Niu^1,2, Fanyu Meng³, Huanfang Yue³, Lihong Yang⁴, Jing Dong^2,5, Xin Zhang^2,5,*

Intelligent Automation & Soft Computing, Vol.28, No.1, pp. 93-106, 2021, DOI:10.32604/iasc.2021.010131 - 17 March 2021

Abstract Soil moisture is an important indicator for agricultural planting and agricultural water management. People have been trying to guide crop cultivation, formulate irrigation systems, and develop intelligent agriculture by knowing exactly what the soil moisture is in real time. This paper considers the impact of meteorological parameters on soil-moisture change and proposes a soil-moisture prediction method based on the Gene Expression Programming (GEP) algorithm. The prediction model is tested on datasets from Shunyi, Yanqing and Daxing agricultural farms, Beijing. The results show that the GEP model can predict soil moisture with a maximum correlation coefficient More >

FANGLIAN HE¹, WEIQING DONG^1,*, SHAOLONG WEI^2,*, ZUYANG QIU³, JINGLI HUANG⁴, HUIPING JIANG¹, SHIYU HUANG¹, LILI LIU³

BIOCELL, Vol.45, No.3, pp. 785-796, 2021, DOI:10.32604/biocell.2021.014418 - 03 March 2021

Abstract Taro (Colocasia esculenta (L.) Schott) is an important crop in Africa, Southeast Asia, and subtropics and is used as a food and medicine. The purple color pigmentation is an appealing character in taro. We sampled taro corms of the cultivar ‘Lipu Taro’ at four developmental stages, including LPYS1 (without purple pigment, 50 days of development (DOD)), LPYS2 (very few purple pigments, 75 DOD), LPYS3 (moderate purple pigments, 115 DOD) and LPYS4 (high purple pigments, 205 DOD). The purpose of our study was to identify the key genes underpinning the purple pigmentation in taro based on RNA-sequencing.… More >

Heyam H. Al-Baity^*, Nourah Al-Mutlaq

CMC-Computers, Materials & Continua, Vol.67, No.3, pp. 3089-3106, 2021, DOI:10.32604/cmc.2021.015291 - 01 March 2021

Abstract Machine-learning algorithms have been widely used in breast cancer diagnosis to help pathologists and physicians in the decision-making process. However, the high dimensionality of genetic data makes the classification process a challenging task. In this paper, we propose a new optimized wrapper gene selection method that is based on a nature-inspired algorithm (simulated annealing (SA)), which will help select the most informative genes for breast cancer prediction. These optimal genes will then be used to train the classifier to improve its accuracy and efficiency. Three supervised machine-learning algorithms, namely, the support vector machine, the decision… More >

XIAOYU WANG^1,2,#,*, TAKESHI YAMAMOTO^2,#, MAKOTO KADOWAKI², YIFU YANG¹

BIOCELL, Vol.45, No.2, pp. 395-415, 2021, DOI:10.32604/biocell.2021.012280 - 19 February 2021

Abstract Mast cells are the main effector cells in IgE-associated allergic disorders, and we have reported that mucosal mast cells (MMCs) play a more important role in the development of food allergy (FA). IgE with antigen or calcium ionophore stimulation can lead to the activation of MMCs via a calcium-dependent pathway. The purpose of the present study was to identify gene signatures with IgE/antigen (dinitrophenyl-bovine serum albumin, DNP-BSA) or calcium ionophore (A23187) on the activation of MMCs. Differentially expressed genes between the two types of samples were identified with microarray analysis. Gene ontology functional and pathway… More >

Hans Christian Correa-Aguado^1,3, Gloria Viviana Cerrillo-Rojas¹, Alejandro Rocha-Uribe², Ruth Elena Soria-Guerra², José Francisco Morales-Domínguez^1,*

Phyton-International Journal of Experimental Botany, Vol.90, No.2, pp. 515-531, 2021, DOI:10.32604/phyton.2021.013619 - 07 February 2021

Abstract The need for renewable energy sources makes microalgae an essential feedstock for biofuels production. The molecular aspects and the response to nitrogen (N)-limited conditions with a phytohormone stimulus in microalgae have been slightly explored. In this work, Scenedesmus obliquus was used as a study model to analyze the effect of benzyl amino purine (BAP) and gibberellic acid (GA) coupled to nitrogen limitation on cell growth, biomass and fatty acids. The selected 10^-5 M BAP increased the biomass by 1.44-fold, and 10^-6 M GA by 1.35-fold. The total lipids also increased by 2.8 and 1.11-fold, respectively. The 10^-5 M… More >