Mengjie Xu, Anbin Wang, Tonghong Zuo, Hecui Zhang, Zhihao Hu, Liquan Zhu^*

Phyton-International Journal of Experimental Botany, Vol.94, No.1, pp. 157-179, 2025, DOI:10.32604/phyton.2025.060566 - 24 January 2025

Abstract Calmodulin-like (CMLs) proteins are critical in calcium signaling and essential for plant growth, development, and stress responses. In many species, the CMLs families have been identified and described. However, the characterization and expression profiling of CMLs genes in tobacco is retrievable. In this study, a comprehensive whole-genome identification and analysis, and 75 NtCML genes were identified in tobacco, each containing two to four EF-hand domains. Most NtCML proteins exhibited conserved gene structures and motifs. Notably, most NtCML proteins were intron-less and distributed across 18 chromosomes. Two pairs of tandemly duplicated genes and seven pairs of segmentally More >

Ammar Fahem Majeed^1,2,*, Rashidah Arsat¹, Muhammad Ariff Baharudin¹, Nurul Mu’azzah Abdul Latiff¹, Abbas Albaidhani³

Computer Systems Science and Engineering, Vol.49, pp. 159-183, 2025, DOI:10.32604/csse.2024.058741 - 03 January 2025

Abstract Accurate non-line of sight (NLOS) identification technique in ultra-wideband (UWB) location-based services is critical for applications like drone communication and autonomous navigation. However, current methods using binary classification (LOS/NLOS) oversimplify real-world complexities, with limited generalisation and adaptability to varying indoor environments, thereby reducing the accuracy of positioning. This study proposes an extreme gradient boosting (XGBoost) model to identify multi-class NLOS conditions. We optimise the model using grid search and genetic algorithms. Initially, the grid search approach is used to identify the most favourable values for integer hyperparameters. In order to achieve an optimised model configuration,… More >

XIANG LI^1,#, WENKE JIN^2,#, LIFENG WU², HUAN WANG¹, XIN XIE¹, WEI HUANG^1,*, BO LIU^2,*

Oncology Research, Vol.33, No.1, pp. 67-81, 2025, DOI:10.32604/or.2024.055921 - 20 December 2024

Abstract Background: Triple-negative breast cancer (TNBC), characterized by its lack of traditional hormone receptors and HER2, presents a significant challenge in oncology due to its poor response to conventional therapies. Autophagy is an important process for maintaining cellular homeostasis, and there are currently autophagy biomarkers that play an effective role in the clinical treatment of tumors. In contrast to targeting protein activity, intervention with protein-protein interaction (PPI) can avoid unrelated crosstalk and regulate the autophagy process with minimal interference pathways. Methods: Here, we employed Naive Bayes, Decision Tree, and k-Nearest Neighbors to elucidate the complex PPI… More >

Chao Zhang¹, Shang-Xi Lai¹, Hua-Ping Wang^1,2,*

Structural Durability & Health Monitoring, Vol.19, No.1, pp. 25-54, 2025, DOI:10.32604/sdhm.2024.053662 - 15 November 2024

Abstract Modal parameters can accurately characterize the structural dynamic properties and assess the physical state of the structure. Therefore, it is particularly significant to identify the structural modal parameters according to the monitoring data information in the structural health monitoring (SHM) system, so as to provide a scientific basis for structural damage identification and dynamic model modification. In view of this, this paper reviews methods for identifying structural modal parameters under environmental excitation and briefly describes how to identify structural damages based on the derived modal parameters. The paper primarily introduces data-driven modal parameter recognition methods… More >

Yuan Wang¹, Tianle Zhang¹, Xinfeng Zeng¹, Jiale Liu¹, Siyu Li¹, Siyu Yang¹, Shengnan Zhao¹, Abdullah Shah², Muhammad Saif Ullah², Guohui Qi^1,*, Peng Jia^1,*

Phyton-International Journal of Experimental Botany, Vol.93, No.12, pp. 3331-3346, 2024, DOI:10.32604/phyton.2024.059402 - 31 December 2024

Abstract LONELY GUY (LOG) is a pivotal cytokinin-activating enzyme that plays an important role in plant growth, development, and stress responses. Walnut (Juglans regia), an important woody oilseed species, has not yet undergone systematic identification of its LOG gene family. In this study, we identified 17 JrLOG genes in the walnut genome, which are unevenly distributed across 11 chromosomes. JrLOG gene expansion was primarily driven by gene duplication, along with purifying selection. Members of the JrLOG family were categorized into five groups, each exhibiting analogous gene structures, featured motifs, and conserved domains. Transcriptome and quantitative real-time PCR analyses More >

Huiru Deng^#, Huan Tian^#, Liuyan Yang, Siyang Ou, Hui Wang, Guangdong Geng^*, Suqin Zhang^*

Phyton-International Journal of Experimental Botany, Vol.93, No.12, pp. 3273-3291, 2024, DOI:10.32604/phyton.2024.058638 - 31 December 2024

Abstract Hot pepper (Capsicum annuum var. conoides) is a significant vegetable that is widely cultivated around the world. Currently, global climate change has caused frequent severe weather events, and waterlogging stress harms the pepper industry by affecting the planting period, growth conditions, and disease susceptibility. The gene CaABI3/VP1-1 could improve pepper waterlogging tolerance. In order to explore the upstream regulatory mechanism of CaABI3/VP1-1, a high-quality standardized yeast hybrid library was successfully constructed for yeast one-, two-, and three-hybrid screening using pepper ‘ZHC2’ as the experimental material, with a library recombinant efficiency of up to 100%. The length of inserted… More >

Haizhen Wang^1,2,*, Na Jia^1,2, Yang He¹, Pan Tan^1,2

CMC-Computers, Materials & Continua, Vol.81, No.3, pp. 3825-3851, 2024, DOI:10.32604/cmc.2024.055497 - 19 December 2024

Abstract As the popularity and dependence on the Internet increase, DDoS (distributed denial of service) attacks seriously threaten network security. By accurately distinguishing between different types of DDoS attacks, targeted defense strategies can be formulated, significantly improving network protection efficiency. DDoS attacks usually manifest as an abnormal increase in network traffic, and their diverse types of attacks, along with a severe data imbalance, make it difficult for traditional classification methods to effectively identify a small number of attack types. To solve this problem, this paper proposes a DDoS recognition method CVWGG (Conditional Variational Autoencoder-Wasserstein Generative Adversarial… More >

Ruike Shi¹, Haitian Yang¹, Yue Mei¹, Yiqian He^1,2,*

The International Conference on Computational & Experimental Engineering and Sciences, Vol.31, No.3, pp. 1-1, 2024, DOI:10.32604/icces.2024.012458

Abstract Soft biological tissues, like cartilage or arteries, are often modeled as biphasic, considering both solid matrix and interstitial fluid [1]. This biphasic behavior involves chemo-mechanical couplings that control interstitial fluid osmotic pressure [2]. Therefore, the research on the inverse problems of osmotic pressure in soft tissues is important. In this paper, the authors propose a virtual fields method (VFM) for identifying the constitutive model of solid-liquid biphasic hyperelasticity. This method constructs virtual fields based on finite elements (FE) to solve linearly independent virtual fields that can automatically satisfy constraint conditions of the solution of VFM.… More >

Abdil Hakan Eren^*

Phyton-International Journal of Experimental Botany, Vol.93, No.11, pp. 2883-2907, 2024, DOI:10.32604/phyton.2024.058627 - 30 November 2024

Abstract Background: Aldehyde dehydrogenase (ALDH) genes constitute an important family of supergenes that play key roles in synthesizing various biomolecules and maintaining cellular homeostasis by catalyzing the oxidation of aldehyde products. With climate change increasing the exposure of plants to abiotic stresses such as salt and drought, ALDH genes have been identified as important contributors to stress tolerance. In particular, they help to reduce stress-induced lipid peroxidation. Objectives: This study aims to identify and characterize members of the ALDH supergene family in Phaseolus vulgaris through a genome-wide bioinformatic analysis and investigate their role in response to abiotic stressors such… More >

Yue Zhao^1,2,#, Shah Faheem Afzal^2,#, Zhu Chen², Khan Arif Kamal^1,2, Yuzhi Fei², Xin Meng^1,2, Jie Ren^2,*, Hua Liu^1,*

Phyton-International Journal of Experimental Botany, Vol.93, No.11, pp. 3109-3130, 2024, DOI:10.32604/phyton.2024.056548 - 30 November 2024

Abstract Acer rubrum is an important garden color-leafed plant. Its leaves will turn red in autumn, which is of great ornamental value. The leaf color change in Acer rubrum is closely associated with anthocyanins accumulation. In anthocyanin synthesis and accumulation, various transcription factor families play significant regulatory roles, including the basic (region) leucine zipper (bZIP). However, there is no report on the systematic identification and functional analysis of the bZIPs in Acer rubrum. In this study, 137 bZIPs distributed on 29 chromosomes of Acer rubrum were identified and renamed according to their locations on the chromosomes. According to the constructed… More >