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  • Open Access

    ARTICLE

    Pathway Mutations in Breast Cancer Using Whole-Exome Sequencing

    Ya-Sian Chang*†‡§, Chieh-Min Chang†‡, Chien-Yu Lin¶#, Dy-San Chao, Hsi-Yuan Huang, Jan-Gowth Chang*†‡**††

    Oncology Research, Vol.28, No.2, pp. 107-116, 2020, DOI:10.3727/096504019X15698362825407

    Abstract The genomic landscape of breast cancer (BC) is complex. The purpose of this study was to decipher the mutational profiles of Taiwanese patients with BC using next-generation sequencing. We performed whole-exome sequencing on DNA from 24 tumor tissue specimens from BC patients. Sanger sequencing was used to validate the identified variants. Sanger sequencing was also performed on paired adjacent nontumor tissues. After genotype calling and algorithmic annotations, we identified 49 deleterious variants in canonical cancer-related genes in our BC cohort. The most frequently mutated genes were PIK3CA (16.67%), FKBP9 (12.5%), TP53 (12.5%), ATM (8.33%), CHEK2 (8.33%), FOXO3 (8.33%), NTRK1More >

  • Open Access

    ARTICLE

    miRNA–mRNA Profiling Reveals Prognostic Impact of SMC1A Expression in Acute Myeloid Leukemia

    Nikhil Gadewal*1, Rohit Kumar†1, Swapnil Aher, Anagha Gardane, Tarang Gaur, Ashok K. Varma*‡§, Navin Khattry, Syed K. Hasan†§¶

    Oncology Research, Vol.28, No.3, pp. 321-330, 2020, DOI:10.3727/096504020X15816752427321

    Abstract Acute myeloid leukemia (AML) with NPM1 mutation is a disease driving genetic alteration with good prognosis. Although it has been suggested that NPM1 mutation induces chemosensitivity in leukemic cells, the underlying cause for the better survival of NPM1 mutated patients is still not clear. Mutant NPM1 AML has a unique microRNA and their target gene (mRNA) signature compared to wild-type NPM1. Dynamic regulation of miRNA–mRNA has been reported to influence the prognostic outcome. In the present study, in silico expression data of miRNA and mRNA in AML patients was retrieved from genome data commons, and differentially expressed miRNA and mRNA… More >

  • Open Access

    REVIEW

    Research Progress in Immunotherapy of NSCLC With EGFR-Sensitive Mutations

    Yudie Yang*1, Xia Zhang†1, Yajie Gao*, Yan Dong*, Di Wang*, Yanping Huang*, Tianhao Qu*, Buqun Fan*, Qizheng Li*, Chunxia Zhang*, Xiaonan Cui*, Bin Zhang*

    Oncology Research, Vol.29, No.1, pp. 63-74, 2021, DOI:10.3727/096504022X16462176651719

    Abstract Lung cancer is a malignant tumor with high incidence and mortality across the world. The use of immune checkpoint inhibitors for lung cancer has improved the prognosis of some lung cancer patients to a greater extent and provided a new direction for the clinical treatment of lung cancer. Immunotherapy still has limitations in terms of its appropriate population and adverse reactions. Particularly for non-small cell lung cancer (NSCLC) patients with epidermal growth factor receptor (EGFR) mutation, there has been no major breakthrough in current immunotherapy. Whether immunotherapy can bring new benefits after drug resistance is induced by tyrosine kinase inhibitor-targeted… More >

  • Open Access

    ARTICLE

    Moving Multi-Object Detection and Tracking Using MRNN and PS-KM Models

    V. Premanand*, Dhananjay Kumar

    Computer Systems Science and Engineering, Vol.44, No.2, pp. 1807-1821, 2023, DOI:10.32604/csse.2023.026742

    Abstract On grounds of the advent of real-time applications, like autonomous driving, visual surveillance, and sports analysis, there is an augmenting focus of attention towards Multiple-Object Tracking (MOT). The tracking-by-detection paradigm, a commonly utilized approach, connects the existing recognition hypotheses to the formerly assessed object trajectories by comparing the similarities of the appearance or the motion between them. For an efficient detection and tracking of the numerous objects in a complex environment, a Pearson Similarity-centred Kuhn-Munkres (PS-KM) algorithm was proposed in the present study. In this light, the input videos were, initially, gathered from the MOT dataset and converted into frames.… More >

  • Open Access

    ARTICLE

    Mutation Prediction for Coronaviruses Using Genome Sequence and Recurrent Neural Networks

    Pranav Pushkar1, Christo Ananth2, Preeti Nagrath1, Jehad F. Al-Amri5, Vividha1, Anand Nayyar3,4,*

    CMC-Computers, Materials & Continua, Vol.73, No.1, pp. 1601-1619, 2022, DOI:10.32604/cmc.2022.026205

    Abstract The study of viruses and their genetics has been an opportunity as well as a challenge for the scientific community. The recent ongoing SARS-Cov2 (Severe Acute Respiratory Syndrome) pandemic proved the unpreparedness for these situations. Not only the countermeasures for the effect caused by virus need to be tackled but the mutation taking place in the very genome of the virus is needed to be kept in check frequently. One major way to find out more information about such pathogens is by extracting the genetic data of such viruses. Though genetic data of viruses have been cultured and stored as… More >

  • Open Access

    ARTICLE

    PI3 kinase isoform p110δ is more important than p110α in KIT signaling in hematopoietic cells

    LIANGYING ZHANG1, SHAOTING ZHANG1, ZHAOYANG FAN1, ZONGYING JIANG1,2, ANBU LIU1, SHUJING LI1,2, JIANMIN SUN1,*

    BIOCELL, Vol.46, No.9, pp. 2081-2087, 2022, DOI:10.32604/biocell.2022.020109

    Abstract PI3 kinases are important for KIT signaling and KIT mutants mediated cell transformation. In order to know the difference of PI3 kinase isoforms p110α and p110δ in the signaling of wild-type KIT and the often occurred KIT mutation D816V in hematopoietic malignancy mastocytosis, the predominant PI3 kinase isoform p110δ in hematopoietic tissues was knocked out in hematopoietic cells. We found that loss of p110δ expression dramatically inhibits PI3 kinase activation mediated by both wild-type KIT and KIT/D816V. By over expression of p110α in p110δ knock out cells, wild-type KIT mediated PI3 kinase activation was not changed while over expression of… More >

  • Open Access

    REVIEW

    Current and future therapies for abnormal early embryogenesis with assisted reproductive technology

    XIAOXIA WANG1,#, ZHONGYUAN YAO1,2,#, DI LIU1, CHUNHONG YU3,*, HUI LI1,3,*

    BIOCELL, Vol.46, No.8, pp. 1803-1806, 2022, DOI:10.32604/biocell.2022.019731

    Abstract Each stage of embryonic development, including normal gamete maturation, fertilization, zygotic genome activation, and cleavage, is crucial for human reproduction. Early embryo arrest is a common phenomenon. It is estimated that about 40%–70% of human embryos are arrested at early developmental stages. However, the exact mechanism remains largely uncertain. Embryos can be investigated in vitro by way of the development of in vitro fertilization/intracytoplasmic sperm injection. In addition to iatrogenic factors related to abnormal oocyte/embryo development, multiple gene mutations have been found to be involved in such phenotypes. Based on the knowledge of known etiological factors, several therapies are proposed… More >

  • Open Access

    ARTICLE

    Intelligent Approach for Clustering Mutations’ Nature of COVID-19 Genome

    Ankur Dumka1, Parag Verma2, Rajesh Singh3, Anuj Bhardwaj4, Khalid Alsubhi5, Divya Anand6,7,*, Irene Delgado Noya7,8, Silvia Aparicio Obregon7,9

    CMC-Computers, Materials & Continua, Vol.72, No.3, pp. 4453-4466, 2022, DOI:10.32604/cmc.2022.023974

    Abstract In December 2019, a group of people in Wuhan city of Hubei province of China were found to be affected by an infection called dark etiology pneumonia. The outbreak of this pneumonia infection was declared a deadly disease by the China Center for Disease Control and Prevention on January 9, 2020, named Novel Coronavirus 2019 (nCoV-2019). This nCoV-2019 is now known as COVID-19. There is a big list of infections of this coronavirus which is present in the form of a big family. This virus can cause several diseases that usually develop with a serious problem. According to the World… More >

  • Open Access

    REVIEW IN FRENCH

    Hairy Cell Leukemia and HCL-Like Disorders: Diagnosis and Treatment
    Leucémie à Tricholeucocytes et Autres Proliférations à Cellules Chevelues: Diagnostic et Traitement

    Elsa Maitre, Xavier Troussard*

    Oncologie, Vol.24, No.1, pp. 3-24, 2022, DOI:10.32604/oncologie.2022.021490

    Abstract Hairy cell leukemia (LT) accounts for 2% of all leukemias. The diagnosis is based on the presence in the blood and/ or the marrow of hairy cells expressing CD103, CD123, CD11c and CD25. The BRAFV600E mutation, a molecular marker of the disease, is present in more than 80% of cases. LT should be distinguished from other chronic B-cell lymphoproliferative disorders, including the variant form of hairy cell leukemia (HCL-V) and diffuse splenic red pulp lymphoma (DSRPL). Progress has recently been made in the management of patients. The purine analogues (PNAs) in monotherapy, deoxycoformycin (DCF) or 2-chloro-deoxyadenosine (CDA), remain the first-line… More >

  • Open Access

    ARTICLE

    DWT-SVD Based Image Steganography Using Threshold Value Encryption Method

    Jyoti Khandelwal1, Vijay Kumar Sharma1, Dilbag Singh2,*, Atef Zaguia3

    CMC-Computers, Materials & Continua, Vol.72, No.2, pp. 3299-3312, 2022, DOI:10.32604/cmc.2022.023116

    Abstract Digital image steganography technique based on hiding the secret data behind of cover image in such a way that it is not detected by the human visual system. This paper presents an image scrambling method that is very useful for grayscale secret images. In this method, the secret image decomposes in three parts based on the pixel's threshold value. The division of the color image into three parts is very easy based on the color channel but in the grayscale image, it is difficult to implement. The proposed image scrambling method is implemented in image steganography using discrete wavelet transform… More >

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