Yuehan Du^1,2, Ruoyu Zhang¹, Xu Zhang¹, Antai Ouyang³, Xiaodong Zhang⁴, Jinyong Cheng¹, Wenpeng Lu^1,*

Journal of Quantum Computing, Vol.1, No.1, pp. 21-28, 2019, DOI:10.32604/jqc.2019.06063

Abstract The algorithm based on combination learning usually is superior to a single classification algorithm on the task of protein secondary structure prediction. However, the assignment of the weight of the base classifier usually lacks decision-making evidence. In this paper, we propose a protein secondary structure prediction method with dynamic self-adaptation combination strategy based on entropy, where the weights are assigned according to the entropy of posterior probabilities outputted by base classifiers. The higher entropy value means a lower weight for the base classifier. The final structure prediction is decided by the weighted combination of posterior probabilities. Extensive experiments on CB513… More >

María Cecilia Basso^1*, Antonio Pizzi^1,2

Journal of Renewable Materials, Vol.5, No.1, pp. 48-53, 2017, DOI:10.7569/JRM.2016.634124

Abstract New aldehyde-free and isocyanate-free biofoams have been obtained by reacting albumin chicken egg white and dimethyl carbonate (DMC). The optimized formulations yielded lightweight foams whose densities were evaluated as 0.016–0.16 g/cm3. Mechanical resistance was 0.023–0.34 MPa and residual pH nearly neutral. The new foams presented up to 57% of closed cells as measured by helium pycnometry and good thermal insulation. These new natural foams are environmentally friendly materials and show very promising properties. More >

Miguel Ángel Ramírez¹, Patricia González², Juan Reinerio Fagundo², Margaret Suarez³, Clara Melian³, Tania Rodríguez¹, Carlos Peniche^4*

Journal of Renewable Materials, Vol.5, No.1, pp. 30-37, 2017, DOI:10.7569/JRM.2016.634121

Abstract The inorganic components of crustacean shells are usually removed using HCl solutions. This provokes undesirable modifications in the extracted chitin. In the present procedure, deproteinized lobster shells were demineralized with CO2 and a cationic resin (cationite). The resulting chitin (CHI-CO2) is compared in terms of degree of acetylation (DA), crystallinity index (CrI) and thermal stability with chitins obtained by demineralization procedures with HCl (CHI-HCl) and ethylenediaminetetraacetic acid (CHI-EDTA). The ash content of chitins demineralized with CO2 was similar to that of chitins prepared using HCl or EDTA. However, the resultant DA and CrI of CHI-HCl and CHI-EDTA were lower than… More >

Evelien Uitterhaegen^1,2, Quang Hung Nguyen^1,2, Othmane Merah^1,2, Christian V. Stevens³, Thierry Talou^1,2, Luc Rigal^1,2, Philippe Evon^1,2*

Journal of Renewable Materials, Vol.4, No.3, pp. 225-238, 2016, DOI:10.7569/JRM.2015.634120

Abstract New fiberboards were manufactured from a coriander cake through thermo-pressing, and the influence of thermo-pressing conditions (temperature, pressure and time) on the boards’ mechanical properties, their thickness swelling and their water absorption was evaluated. Because the protein glass transition systematically occurred during molding, this resulted in effective wetting of the fibers. Consequently, all boards were cohesive, with proteins and fibers acting as binder and reinforcing fillers, respectively. Flexural properties were influenced by all tested conditions, and the optimal board was molded at 200 °C temperature, 36.8 MPa pressure and 180 s time. Its flexural strength at break and its elastic… More >

Nuria Burgos, Arantzazu Valdés, Alfonso Jiménez^*

Journal of Renewable Materials, Vol.4, No.3, pp. 165-177, 2016, DOI:10.7569/JRM.2016.634108

Abstract In this study we provide an overview of the latest developments on the extraction, production, modification and applications of fruit residues and by-products in the formation of protein-based biopolymers, in particular for the formulation of edible films. Our aim was mainly to demonstrate the highly transdisciplinary character of these topics by giving an overview of the main developments and research topics in the chemistry and engineering aspects of protein-based biopolymers. These innovative raw materials have been evaluated for the production of biomaterials to be used in some key sectors, such as food packaging. More >

Flávio Pereira¹, João Pereira², Nádia Paiva³, João Ferra³, Jorge Manuel Martins^1,4, Fernão D. Magalhães¹, and Luísa Carvalho^1,4*

Journal of Renewable Materials, Vol.4, No.1, pp. 41-46, 2016, DOI:10.7569/JRM.2015.634128

Abstract This work studies the use of soy protein as a natural formaldehyde scavenger in wood particleboard production. The protein is incorporated in two forms: a) as a powder, during the blending process of wood particles with urea-formaldehyde binder resin, and b) as an aqueous solution, added at different times during resin synthesis. Analysis of variance (ANOVA) was used to evaluate the signifi cance level of two effects (amount of added soy and time of addition) on internal bond strength, thickness swelling, and formaldehyde content of the resulting panels. The results showed that soy protein can contribute to decrease the formaldehyde… More >

Bo Ling^1,#, Daoxi Lei^1,#, Juhui Qiu¹, Kang Zhang¹, Hao Chen^2,*, Yeqi Wang¹, Zhiyi Ye¹, Guixue Wang^*

Molecular & Cellular Biomechanics, Vol.14, No.4, pp. 197-211, 2017, DOI:10.3970/mcb.2017.014.197

Abstract Shear stress and oxidized low-density lipoprotein (oxLDL) caused by abnormal blood is critical to angiogenesis for atherosclerosis. However, the mechanism in shear stress or ox-LDL regulated angiogenesis is still not well understood. There is the hypothesis that shear stress or oxLDL regulates angiogenesis through the vascular endothelial growth factor (VEGF) signaling pathway. It is discovered that both high shear stress and low concentration of oxLDL contribute to angiogenesis, which is inhibited once the VEGF or VEGFR expression is knocked down. The expression of p-FAK and p-paxillin is regulated by the VEGF/VEGFR signal axis. VEGFR2, p-FAK, p-paxillin and VEGFR1 are VEGF-responsive… More >

Kefeng Liu^{1,2, §}, Zhengyu Zhang^{1,3, §}, Ting Pei¹, Ziqing Li⁴, Jingjing Wang¹, Hong Wang¹, Suning Ping¹, Lie Deng¹, Linli Wang¹, Jintao Huang⁵, Puyi Sheng⁴, Shuying Liu¹, Chaohong Li¹

Molecular & Cellular Biomechanics, Vol.14, No.2, pp. 101-123, 2017, DOI:10.3970/mcb.2017.014.099

Abstract This study was designed to investigate the effects of mechanical (MS) and/or oxidized low-density lipoprotein on proliferation and apoptosis of RAW264.7 macrophages and the underlying mechanisms. The cultured quiescent RAW264.7 macrophages were subject to stimulation with MS and/or in the presence or absence of simvastatin and then harvested for Western blot, and immunoflourecence. Either MS or alone could cause increase in cell proliferation and apoptosis, while their combination led to an additive effect. In terms of mechanisms, MS and/or significantly increased phosphorylation levels of MAPKs (ERKs, JNKs and p38MAPK), promoted the reactive oxygen species (ROS) and up-regulated DNA methylation in… More >

Yidan Chen^#,1, Kang Zhang^#,1, Juhui Qiu¹, Shicheng He¹, Junyang Huang², Lu Huang¹, Dongyu Jia³, Bo Ling¹, Da Sun⁴, Xiang Xie¹, Tieying Yin^*,1, Guixue Wang^*,1

Molecular & Cellular Biomechanics, Vol.14, No.2, pp. 83-100, 2017, DOI:10.3970/mcb.2017.014.081

Abstract Abnormal shear stress in the blood vessel is an important stimulating factor for the formation of angiogenesis and vulnerable plaques. This paper intended to explore the role of shear stress-regulated Id1 in angiogenesis. First, we applied a carotid artery ring ligation to create local stenosis in ApoE^-/- mice. Then, 3D geometry of the vessel network was reconstructed based on MRI, and our analysis of computational fluid dynamics revealed that wall shear stress of the proximal region was much higher than that of the distal region. In addition, results from histological staining of the proximal region found more vulnerable-probe plaques with… More >

Wei Huang^∗,†, Yi Wah Mak^*, Peter C. Y. Chen^‡§

Molecular & Cellular Biomechanics, Vol.8, No.2, pp. 91-104, 2011, DOI:10.3970/mcb.2011.008.091

Abstract A molecular configuration tensor Pij was introduced to analyze the distribution of fibrous proteins in vascular cells for studying cells and tissues biomechanics. We have used this technique to study the biomechanics of vascular remodeling in response to the changes of blood pressure and flow. In this paper, the remodeling of the geometrical arrangement of F-actin fibers in the smooth muscle cells in rat's pulmonary arteries in hypoxic hypertension was studied. The rats were exposed to a hypoxia condition of 10% for 0, 2, 12, and 24 hr at sea level. Remodeling of blood vessels were studied at the in… More >