Volkan Kaya¹, İsmail Akgül¹, Özge Zencir Tanır^2,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2519-2534, 2023, DOI:10.32604/phyton.2023.029811

Abstract Classification and monitoring of microalgae species in aquatic ecosystems are important for understanding population dynamics. However, manual classification of algae is a time-consuming method and requires a lot of effort with expertise due to the large number of families and genera in its classification. The recognition of microalgae species has become an increasingly important research area in image recognition in recent years. In this study, machine learning and deep learning methods were proposed to classify images of 12 different microalgae species in order to successfully classify algae cells. 8 Different novel models (MobileNetV3Small-Lr, MobileNetV3SmallRf, MobileNetV3Small-Xg, MobileNetV3Large-Lr, MobileNetV3Large-Rf, MobileNetV3Large-Xg, MobileNetV3Small-Improved and… More >

Jing Yang^1,2, Yufeng Wang², Zhanghua Hu³, Xiaoping Chen⁴, Yanjun Dong^5,*, Sheng Teng^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2649-2663, 2023, DOI:10.32604/phyton.2023.030710

Abstract Improvement of photosynthetic efficiency is a major approach to increase crop yield potential. Previously, we cloned a gene encoding the chloroplast-located putative monooxygenase TCD5, which is essential in plastid development under low temperature in rice (Oryza sativa L.). In this study, the effects of TCD5 on the photosynthesis and the yields were investigated in rice. Two sets of genetic materials with three levels of TCD5 expression, including tcd5 mutant or TCD5 RNAi transgenic lines and TCD5 over-expression transgenic lines in Jiahua1 and Nipponbare backgrounds, were used in the field trails of multi-locations and multi-years. TCD5 positively affected the panicle number… More >

Jing Yang, Tianxiunan Pu, Ke Wan, Linqi Wang, Yuanshuai Shi, Xu Luo, Jie Tan, Dongmei Wang, Yang Liu^*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2555-2576, 2023, DOI:10.32604/phyton.2023.030301

Abstract Drought has severely affected the yield and quality of commercial crops. The BRI1 family plays an important role in plant response to drought stress, and BRL3 gene plays an important role in the study of drought in Arabidopsis thaliana. In this study, NtBRL3 was constructed as a vector and genetically transformed to obtain ‘N. Tobacco K326’ overexpression of NtBRL3. The enzyme activities of transgenic tobacco and wild-type tobacco were measured and transcriptome and metabolome analyses were performed. The results showed that the antioxidant enzymes of transgenic tobacco were more active under drought conditions, and 85 significantly differentially metabolites and 106… More >

Genhai Hu^1,*, Maoni Chao¹, Xiuren Zhou², Yuanzhi Fu²

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2535-2554, 2023, DOI:10.32604/phyton.2023.030163

Abstract Gossypium hirsutum L. is an important cash crop native to the subtropics and is widely cultivated around the world. Low temperature is an important stress that seriously affects seed germination and emergence during planting. In this study, transcriptomic profiles of low-temperature- and normal-temperature-germinated seeds of Xinluzao 25, a variety with low-temperature tolerance and high germination rates, were analyzed and compared. The following results were obtained. (1) A total of 81.06 Gb of clean data were obtained after transcriptome sequencing and assembly, and 76,931 non-redundant Unigene sequences were obtained after data consolidation and concatenation; of these, 69,883 Unigene sequences were annotated.… More >

Xiaolan Guo^1,2, Jinbin Hu³, Shimei Yang⁴, Delu Wang^2,*, Jianbing Wang¹

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2683-2697, 2023, DOI:10.32604/phyton.2023.029820

Abstract The F3′5′H gene family plays an important role in regulating anthocyanin biosynthesis, abiotic stress, and hormone signaling. In this study, 14 F3′5′H genes were identified from the blueberry genome. The chromosomal distribution, physicochemical properties, F3′5′H domain, conserved motifs, cis-acting elements, and intron/exon compositions were analyzed. The functional prediction analysis of these VcF3′5′Hs indicated that their biological functions included light response and other secondary metabolites. The results of qRT-PCR showed that VcF3′5′Hs (especially VcF3′5′H4) were highly expressed at the ripening stage. Subcellular localization revealed that VcF3′5′H4 may be located in the endoplasmic reticulum. Co-expression analysis showed that the VcF3′5′H gene family… More >

José Adrian Perez-Robles, Carlos Alberto Lecona-Guzmán^*, Víctor Manuel Ruíz-Valdiviezo, Joaquín Adolfo Montes-Molina^*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2503-2518, 2023, DOI:10.32604/phyton.2023.029784

Abstract The objective to this work was to evaluate the enzymatic activity in the culture of Solanum lycopersicum L. infected with Fusarium oxysporum after the combined application of Beauveria bassiana and plant extracts. Solanum lycopersicum plantlets were transplanted 15 days after the emergency. Five days after transplanting, Beauveria bassiana spores were applied at a concentration of 1 × 10⁷ spores mL⁻¹ onto soil (along with A. indica (N) and P. auritum (H) leaf extracts) where S. lycopersicum plants were planted. Eight days after transplanting, spores of F. oxysporum strain were applied at a concentration of 1 × 10⁶ spores mL⁻¹ to… More >

Tongman Zhao^1,2,#, Yujie Fan^1,2,#, Yabing Cao^1,2, Xiaogai Zhao^1,2, Guoqiang Fan^1,2,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2473-2488, 2023, DOI:10.32604/phyton.2023.029469

Abstract Somatic embryogenesis receptor-like kinases (SERKs) are receptor-like proteins that contain leucine-rich repeats and are involved in various signaling pathways. This study identified SERK family members in the Paulownia fortunei genome and analyzed their characteristics and expression profiles using bioinformatics methods. We identified 12 SERK genes with relatively conserved gene structures and motifs that were distributed unevenly on eight Paulownia chromosomes. The gene promoters contained various cis-acting elements that regulated the expression of the PfSERK genes in response to hormones and abiotic stresses. Synteny analysis indicated that 10 segmental duplication events had occurred during evolution of the PfSERK family. The expression… More >

Chen Su, Jie Hong, Jiang Wang, Yang Yang^*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2611-2632, 2023, DOI:10.32604/phyton.2023.029457

Abstract The statistics of the number of rapeseed seedlings are very important for breeders and planters to conduct seed quality testing, field crop management and yield estimation. Calculating the number of seedlings is inefficient and cumbersome in the traditional method. In this study, a method was proposed for efficient detection and calculation of rapeseed seedling number based on improved you only look once version 5 (YOLOv5) to identify objects and deep-sort to perform object tracking for rapeseed seedling video. Coordinated attention (CA) mechanism was added to the trunk of the improved YOLOv5s, which made the model more effective in identifying shaded,… More >

Xiao Han, Songnan Yang, Xueying Li, Qiulin Wu, Yongyi Xing, Jun Zhang^*, Fenglou Ling^*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2577-2589, 2023, DOI:10.32604/phyton.2023.029440

Abstract Peanut, with high oil content, has been a major oil and food crop globally. The compositions of the fatty acids are the common factors in determining the oil quality. In the present study, an F2 segregated population with 140 individuals derived from the cross of Weihua8 (a cultivar) and 12L49 (a line with high oleic acid concentration) was used to construct a genetic map and conduct QTL mapping analysis. A total of 103 polymorphic SSR primers were utilized for genotyping the RILs and finally generating the SSR loci. Within the 103 SSR loci, a genetic linkage map, covering a total… More >

Jie Zhang¹, Yingwei Zhao², Hongying Li³, Jianwei Ni^4,*, Dongmei Wang^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2591-2610, 2023, DOI:10.32604/phyton.2023.028338

Abstract Paper mulberry is a high-quality woody feed resource plant with high crude protein content. It is widely distributed in China and has excellent characteristics of salt and alkali tolerance. Paper mulberry has ecological and economic importance. Salt stress has become a critical factor with the increasing degree of soil salinity that restricts plant growth. In the saline-alkali environments, transcriptome expression is altered leading to phenotypic defects in most plants. However, the regulatory mechanism related to paper mulberry’s salt-stress (SS) response is not clearly understood. In the present study de novo transcriptomic assembly was performed, and gene expression levels were measured… More >